Bioremediation-Techniques and Methods

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Cours: Nature's Solution to Pollution: An Introduction to Bioremediation
Livre: Bioremediation-Techniques and Methods
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Date: vendredi, 31 octobre 2025, 14:49

1. In-Situ Bioremediation

In-situ bioremediation is the process of using bioremediation to remove dangerous chemicals that are present in the soil or water in place  meaning the contamination is addressed where it is located. 

In -situ bioremediation can be either intrinsic (using naturally occurring microorganisms) or engineered (introducing nutrients or specific microorganisms). Examples include bioaugmentation, bioslurping, biosparging, natural attenuation, bioventing, and biostimulation. 

Advantages:
Lower risk of cross-contamination, potentially lower costs, and can be more effective in some cases.
Disadvantages:
 
May take longer, less manageable, and mostly effective in loose soil. 
 
Examples:
Treating contaminated groundwater by adding nutrients to stimulate microbial activity, or using bioaugmentation to introduce specific bacteria to degrade a particular pollutant. 

2. Ex-Situ Bioremediation

Ex -Situ bioremediation involves removing the contaminated material (e.g., soil, sediment) and treating it at another location. 

Methods:
Includes bioreactors, landfarms, and biopiles. Bioreactors use large vessels to mix and treat contaminated material in a controlled environment, while landfarms and biopiles involve placing the contaminated material in isolated areas for treatment. 
Advantages:
Allows for better control of variables like temperature, aeration, and nutrient levels, potentially leading to faster and more efficient treatment. It also prevents the contaminant from spreading further. 
Disadvantages:
Requires the removal and transportation of contaminated material, potentially leading to higher costs and environmental impacts. 
Examples:
Using a bioreactor to treat contaminated soil slurry, or placing contaminated sediment in a biopile for aerobic decomposition. 

3. Phyto remediation

Removing heavy metals from the environment is very difficult because their degradation, like other pollutants, is not possible either biologically or chemically

An innovative technique that is non-invasive, economical, and visually beautiful is phytoremediation. “phytoremediation,” uses plants to clean up the environment as they can extract, accumulate, and depollute the substrate (soil, air, and water) from the contaminants through physical, chemical, or biological processes. 

Metallothioneins, phytochelatins, metalloenzymes, metal-activated enzymes, and numerous metal storage, carrier, and channel proteins are among the many plant-based metal-binding proteins (MBPs) that play a major role in the phytoremediation of heavy metals.

 To increase their ability for phytoremediation, plants undergo genetic modification. Bacillus megaterium's expression of the mercuric ion-binding protein enhances Arabidopsis's ability to accumulate metals.

Phytoextraction

Plants uptake pollutants from soil, water, or sediments by their roots and transfer them to the aboveground biomass where they accumulate, such as in shoots or other harvestable parts of the plant. This is known as phytoextraction

Phytostabilization

Phytostabilization means establishing a plant covering the surface of polluted sites to limit the movement of contaminants within the vadose zone by root accumulation or immobilization inside the rhizosphere, therefore lessening off-site pollution. 

Phytovolatilization

Phytovolatilization refers to the use of plants to absorb heavy metal pollutants and transform them into volatile, less hazardous chemical species via transpiration. Some of the heavy metals, such as, Hg, and Se, may exist in the environment as gaseous species .

A small number of naturally occurring or genetically engineered plants, such as muskgrass (Chara canescens), Indian mustard (Brassica juncea), and Arabidopsis thaliana, have been shown to absorb heavy metals and transform them to gaseous forms within the plant before releasing them into the environment 

Metal-binding proteins in plants

Phytochelatins (PCs)

Plant PCs are cysteine-rich low-molecular-weight polypeptides that are synthesized enzymatically, and their formation is stimulated by the presence of heavy metals .PCs chelate heavy metals by using their thiol groups. The complexes of metals and PCs that are produced as a consequence are stored in vacuoles.

Metallothionein

Plants have developed some adaptations to tackle metal ion concentrations’ increase in soil. An excessive amount of essential metal ions also causes toxicity similar to the non-essential metal ions; the foresaid mechanism provides metal tolerance as well as plays a significant role in the detoxification of excessive metal ions. MT was first discovered in animals than in plants; plant MTs have been discovered only approximately 30 years ago.

Transporter proteins

The transporter proteins of the plants can uptake, translocate and, sequester the heavy metals to provide tolerance to the plants and eventually remediate the contaminated soil. 

4. Mycoremediation

Fungi are used in mycoremediation, a subclass of bioremediation, to break down, restore, and repair damaged environments . The long threads (hyphae) of the fungi used in mycoremediation  adhere to roots, rocks, and soil particles to form a filamentous body that can withstand heavy metals and adjust its growth to temperature, pH, and nutrient variations. Because of their unique hyphal network, biomass, and long lifecycle, fungi are preferred over bacteria in the bioremediation of polluted settings.

Fungi's broad metabolic range allows for a wide range of applications in the removal of different pollutants. Polysaccharides and proteins containing amino, phosphate, hydroxyl, sulfate, and carboxyl groups that bind metal ions are found in fungal cell walls.

The ligand atoms required to create complexes with metal ions, which draw and hold metals in the biomass, are supplied by these functional groups. By choosing metal-tolerant fungus from a contaminated environment, the potential for metal removal is assessed. An efficient site-specific bioremediation method may involve the bioaugmentation of fungus that have the ability to absorb metals. 

5. Bioaugmentation


The technique of adding particular microorganisms to contaminated areas to promote bioremediation and increase the breakdown capability of pollutants is known as bioaugmentation. Bioaugmentation is frequently employed in bioremediation to biodegrade environmental contaminants and resistant pollutants. It can be applied to wastewater and soil treatment.

Bioaugmentation can be done in situ (directly in the contaminated environment) or ex situ (outside of the natural environment, such as in a lab or treatment facility). 

Bioaugmentation can be more efficient and targeted than relying solely on natural microbial populations, as it introduces organisms specifically designed to degrade certain pollutants. 

There can be challenges with ensuring the introduced microbes survive and thrive in the contaminated environment, and there are also potential risks of introducing non-native species. 

6. Bio stimulation

A bioremediation method called biostimulation increases the activity of already-existing microorganisms in a contaminated environment to break down contaminants. In order to speed up biodegradation, the environment is altered by introducing nutrients, electron acceptors, or other substrates to encourage the current microbial community. 

Biostimulation aims to boost the metabolic processes of naturally occurring microorganisms, such as bacteria, that can break down pollutants. 

By adding substances such as: Nutrients (e.g., N, P, trace minerals) ,Electron acceptors (e.g., oxygen, nitrate) ,Moisture or pH adjustments,the microbial metabolism is enhanced, leading to faster and more complete degradation of contaminants.

Examples of Biostimulation Applications:

  • Oil spill cleanups: Adding fertilizers to stimulate hydrocarbon-degrading bacteria.

  • Groundwater remediation: Injecting nutrients to promote microbial reduction of chlorinated solvents.

  • Soil remediation: Adjusting pH and nutrient levels to aid biodegradation of organic pollutants.

7. Biostimulation vs. Bioaugmentation:

Aspect Biostimulation Bioaugmentation
Microorganisms used Native (indigenous) Introduced (foreign or lab-grown)
Strategy Enhance existing microbes Add specific strains
Cost & risk Lower Higher (due to introduction of non-native species)

8. Further Reading

Read the Article on Ex-Situ and In-Situ bioremediation strategies and their limitations for Solid Waste Management: A Mini-Review by Munaza Naseem, Sidra Syab, Sania Akhtar, Maryam Ikram, Maham Batool, Zainab Saeed, Shazia Iqbal,Hina Sattarfrom Journal of Quality Assurance in Agricultural Sciences
Read the article on Phytoremediation technologies and their mechanism for removal of heavy metal from contaminated soil: An approach for a sustainable environment by Jitendra Kumar Sharma, Nitish Kumar,N.P.Singh  and Anita Rani Santal from Frontiers in Plant Science
Read the article on Mycoremediation as a Potentially Promising Technology: Current Status and Prospects—A Review by Akpasi, S. O., Anekwe, I. M. S., Tetteh, E. K., Amune, U. O., Shoyiga, H. O., Mahlangu, T. P., & Kiambi, S. L. (2023) from Applied Sciences 
Read the article on Current Trends in Bioaugmentation Tools for Bioremediation: A Critical Review of Advances and Knowledge Gaps by Olga Muter from Microorganisms11(3), 710. https://doi.org/10.3390/microorganisms11030710
Read the article on Bioremediation of contaminated soil and groundwater by in situ biostimulation authored by Martin Romantschuk, Katariina Lahti-Leikas, Merja Kontro,  Polina Galitskaya, Harri Talvenmäki, Suvi Simpanen,  John A. Allen and Aki Sinkkonen from Frontiers in Microbiology